NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105019_1004340

Scaffold Ga0105019_1004340


Overview

Basic Information
Taxon OID3300007513 Open in IMG/M
Scaffold IDGa0105019_1004340 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16593
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (79.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010829Metagenome / Metatranscriptome298Y
F020814Metagenome / Metatranscriptome222Y
F045695Metagenome / Metatranscriptome152Y
F062149Metagenome131Y
F084706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0105019_100434010F045695N/AMKDKRQLFLNIWNKKNSPVRDSIKAKLEVRGIEPTELNCYEYWMGYIKPWADIRGNVHHVNPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKSRK*
Ga0105019_100434012F084706GGAGGMKQPEVGTTLGKCVFDNGVIVEGQSIRSQYATLRSGRWICGECLLDMLPIALEATQSRMLEEAEKRDKLIAEVKKYGWSVNPDTGKLEKL*
Ga0105019_100434015F010829GAGMGNLADHNRLREEQGLYKEDPGTGTYTKDEMDYIPFLGKNPTDERPAVYTARFKVSDGIIELEAKRSGGKLYLTCLADEKHNRALFECVDRFVAAIFDGTAREIREAQPEDSEIMKLKKHIEQLEKENEEHIETLVKLKSIME*
Ga0105019_100434018F062149GGAGVTEIKDKLDEEAEQRERWIKLLRAGYMFHQQEVRETENPIIGAEPSDINLFHKALSVAIQDAIELIQQMEAYGFFDEELSTPGMAG*
Ga0105019_10043408F020814GAGMGRSKGNLGRRVPTYIGNPPNKEIYPEWWEDEENLMRLNPSYPQRKALIRRKHEQKKQQKSK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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