NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105019_1012872

Scaffold Ga0105019_1012872


Overview

Basic Information
Taxon OID3300007513 Open in IMG/M
Scaffold IDGa0105019_1012872 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6488
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024125Metagenome / Metatranscriptome207N
F025853Metagenome / Metatranscriptome200Y
F047724Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0105019_101287213F025853GGAMKKFLINYIPAVHEGQVNSDNKAYFYRVEIDEQFANRSENDNSAGLAARDTESGLWKRFRFDGIQSAVAI*
Ga0105019_101287214F024125N/ANRFTGKVLTCDQCNAEDSKENEVREWGNPYDHGFICEECDCHET*
Ga0105019_10128726F047724N/AVSEKNITYYRQVFSKDDWAIGLESNDKEYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEERFEQAVLDICRTRVLQDIGGETFKGEKGGVDTMAYDLRKEFMANIKDEIFYTHKMRSIELDPHAELQISAENLTDWDAVKA*
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