NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105019_1017588

Scaffold Ga0105019_1017588


Overview

Basic Information
Taxon OID3300007513 Open in IMG/M
Scaffold IDGa0105019_1017588 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5156
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003401Metagenome489Y
F028200Metagenome192Y
F034711Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0105019_101758810F034711AGAAGMKLDKDIVKNKKKYSSFYTYDNAYGPGFGFRWKEIPAAQTNVVHKRVTSDKTWTKLVQGYGALGITYKGHYRP*
Ga0105019_101758816F003401AGGMQRRDFKDAMREMSEHAAAKIDEHVETLARLNKEQKGELLKFGGVEMDTDFPRTILYAILNRVVHDFTPRNDIHKDTMDKVLKTLQTKELVERVVDESPKK*
Ga0105019_10175889F028200N/AMKGRNKYMKKLTKKQTKKIRDQILVDFIDRHMSKFDRLMNKASKELSTMGLKCSIHALSSQVVKHIATNMADYYGTTEKVKETFQRALDEEVNHRYIHAKAEREEAYIK*
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