NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105020_1003930

Scaffold Ga0105020_1003930


Overview

Basic Information
Taxon OID3300007514 Open in IMG/M
Scaffold IDGa0105020_1003930 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17562
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (78.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015849Metagenome / Metatranscriptome251Y
F020814Metagenome / Metatranscriptome222Y
F049926Metagenome / Metatranscriptome146Y
F075990Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0105020_100393010F020814GAGMGRSKGNLGRSVPARINNPPNKEMNPEWWKDGANLLKLHPNYIERKKYEKQQKKKQP*
Ga0105020_100393015F049926N/AMRQPDAGTTVGRCTFCKDYIIEGMGNRSKYATIRGGHWLCGDCIISLKDVVISAFFDYHKEADEKKKDMLTKLKKYGWSVDPETGKLQKL*
Ga0105020_100393022F015849AGGAGVTGIIDNHPEDSARKKWCELLHAAWMYHQQMVKDNASPIIGAEMSDDQIFHMGCSVAIQDAIALIQQMEAYGYFEKEDHDELPQHKRGPAG*
Ga0105020_100393024F075990AGGAGMTTKPQYYKVMWHNCVKCRTHYTSDAPHVRAYLCDECWNSMPHYSVKNVRKVTKGPTYNKNDIDWKQIALYTLGNICCLIVIGYYLWIK*
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Institute for Fundamental Biomedical Research
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