NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105020_1004287

Scaffold Ga0105020_1004287


Overview

Basic Information
Taxon OID3300007514 Open in IMG/M
Scaffold IDGa0105020_1004287 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16660
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (74.19%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F007121Metagenome / Metatranscriptome357Y
F009987Metagenome / Metatranscriptome310Y
F010876Metagenome / Metatranscriptome298Y
F010942Metagenome / Metatranscriptome297Y
F011446Metagenome / Metatranscriptome291Y
F025588Metagenome / Metatranscriptome201N
F035477Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0105020_100428716F035477GAGGMENFKYFTEAKMARQHFQMIADVIANLDVNDTIKKGIAIKFADAFEDTNPLFKRDLFIKATRKKTE*
Ga0105020_100428719F025588GAGGMKTYDKFKKELTEDGMLHGDPGTENPSTTIHYGPNDPEIVRTASVTMTVPKYRLSESEKGCNHTCAHWRDSSWCNEYHFKCDSTYTCDSWKDSGI*
Ga0105020_100428720F011446AGGAGMEAMILGWAQTQSWWGIATTLIVIANGITMTLRDKYAENIPILGKIWPILNWLSLNIANNKNDEK*
Ga0105020_100428724F007121N/AMLKTIFLTLFLLFCFAAPVDSAVYYKQHDSDGWQIVLQDEFQEPGLDKLLDWVPEEVPRTVSFYFDINGDGKFDLKIAYSLIEAYPCNKTNCVSRIIDKGDHWVLPAPGINYYVIKKWIMYRYVNDADWRGEHKTNDFIYKLYDDWLREKFYPLWPEK*
Ga0105020_100428728F009987GGAGMLSLIGNALGLGLKIMDKMEKNSDKASFEEFKARKKEMDNSLADGDVEGIDSMFEYLAERARAGKTGRKE*
Ga0105020_100428729F007004N/AMIGFCLIVLIGCGTSNAYQKPTVRIVGEAQMKKLPNGNYEVTPRWIKDRFDAENSMLKQLEDCREAR*
Ga0105020_100428730F010942GGAGGVSEQSRESEKKFITIEKDIEHFKYVLNELEKECEFVKNHFTTKNGERLDDIKVLHRRIESHQKTDLDFHENVRKKISEKFDALDERIRQLDKWKWATWGALMVVGALIGNSFPFTLK*
Ga0105020_10042879F010876AGGAGMIDKTAVSFNSSPLYRFMITDGKFKGVEFYFKNVELDSKDDLLGCDVAFEYEIIGGNYRDHGYDGEQEYLNRVITDKNRDQFKVELGKILNNLLVLNDPRVILHKGRMINQ*
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