Scaffold Ga0105502_1000098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105502_1000098

Scaffold Ga0105502_1000098

Overview

Basic Information
Taxon OID	3300007531 Open in IMG/M
Scaffold ID	Ga0105502_1000098 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764224817 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	80464
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (10.98%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F061925	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105502_100009813	F061925	AGGA	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYITINSFSKNIFSALKSILAKQNYHLTNCDTDEEVTLEHIFRSVI*
Ga0105502_100009873	F040685	N/A	MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEDLPKEISLPNTPKNWEAFTKKINLDKFKKLKDGPSEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGVYE*
Ga0105502_100009874	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKVNADTIKTSISEKQNAEKIERIIYESGGDKSGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQANKTWDYITKQVIDIKYSQLYNHLNLEK*

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