Scaffold Ga0099851

Basic Information
Taxon OID	3300007538 Open in IMG/M
Scaffold ID	Ga0099851_1000483 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007538 Open in IMG/M

Scaffold ID

Ga0099851_1000483 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16499
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (25.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16499

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (25.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	Chesapeake Bay, USA
Coordinates	Lat. (^o)	37.0516	Long. (^o)	-76.083	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Chesapeake Bay, USA

Coordinates

Lat. (^o)

37.0516

Long. (^o)

-76.083

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F020341	Metagenome	224	Y
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100048314	F001807	GGAG	MTVLAIEHTSFIDDTHVTITAVVDEMRLLYRATHFEPEEWAPALCITTIQLDPEEPIPLDEDGFCSYLDHLDPDWQIVDTSDEQ*
Ga0099851_100048322	F087066	AGGAG	MDDLQKAFLRGACVTILGFAATGLLASIFLTPDEPKDTSKFEVLDQYQGCSVIRYTDPTSRWHYFLKCS*
Ga0099851_100048327	F020341	N/A	MKGFNSTKQSTRSSSYWVASYTKDNEDEPLGIHKKVLSYKPGQDKEALMTKYCHSLMKLNPHVWEVLVHQGPSEIPNSGDQIVIRLSREPFKGCSELR*
Ga0099851_100048329	F002985	N/A	MSYVIACWRWGTPHAITANKESNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLSGKELQVCDESQFRK*
Ga0099851_10004838	F001165	N/A	MTNPNTPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFISPNGEKFVMTNMDDQDDINALMPEDLK*
Ga0099851_10004839	F001120	N/A	MAQEKSPINFDKTIAGFNVTEHGIKSYSKSFKLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099851_1000483

Overview

Ecosystem & Geography

Associated Families

Sequences