Basic Information | |
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Taxon OID | 3300007538 Open in IMG/M |
Scaffold ID | Ga0099851_1000483 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16499 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (25.71%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Chesapeake Bay, USA | |||||||
Coordinates | Lat. (o) | 37.0516 | Long. (o) | -76.083 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F002985 | Metagenome / Metatranscriptome | 515 | Y |
F020341 | Metagenome | 224 | Y |
F087066 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099851_100048314 | F001807 | GGAG | MTVLAIEHTSFIDDTHVTITAVVDEMRLLYRATHFEPEEWAPALCITTIQLDPEEPIPLDEDGFCSYLDHLDPDWQIVDTSDEQ* |
Ga0099851_100048322 | F087066 | AGGAG | MDDLQKAFLRGACVTILGFAATGLLASIFLTPDEPKDTSKFEVLDQYQGCSVIRYTDPTSRWHYFLKCS* |
Ga0099851_100048327 | F020341 | N/A | MKGFNSTKQSTRSSSYWVASYTKDNEDEPLGIHKKVLSYKPGQDKEALMTKYCHSLMKLNPHVWEVLVHQGPSEIPNSGDQIVIRLSREPFKGCSELR* |
Ga0099851_100048329 | F002985 | N/A | MSYVIACWRWGTPHAITANKESNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLSGKELQVCDESQFRK* |
Ga0099851_10004838 | F001165 | N/A | MTNPNTPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFISPNGEKFVMTNMDDQDDINALMPEDLK* |
Ga0099851_10004839 | F001120 | N/A | MAQEKSPINFDKTIAGFNVTEHGIKSYSKSFKLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLI* |
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