NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099851_1000483

Scaffold Ga0099851_1000483


Overview

Basic Information
Taxon OID3300007538 Open in IMG/M
Scaffold IDGa0099851_1000483 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16499
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (25.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F002985Metagenome / Metatranscriptome515Y
F020341Metagenome224Y
F087066Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0099851_100048314F001807GGAGMTVLAIEHTSFIDDTHVTITAVVDEMRLLYRATHFEPEEWAPALCITTIQLDPEEPIPLDEDGFCSYLDHLDPDWQIVDTSDEQ*
Ga0099851_100048322F087066AGGAGMDDLQKAFLRGACVTILGFAATGLLASIFLTPDEPKDTSKFEVLDQYQGCSVIRYTDPTSRWHYFLKCS*
Ga0099851_100048327F020341N/AMKGFNSTKQSTRSSSYWVASYTKDNEDEPLGIHKKVLSYKPGQDKEALMTKYCHSLMKLNPHVWEVLVHQGPSEIPNSGDQIVIRLSREPFKGCSELR*
Ga0099851_100048329F002985N/AMSYVIACWRWGTPHAITANKESNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLSGKELQVCDESQFRK*
Ga0099851_10004838F001165N/AMTNPNTPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFISPNGEKFVMTNMDDQDDINALMPEDLK*
Ga0099851_10004839F001120N/AMAQEKSPINFDKTIAGFNVTEHGIKSYSKSFKLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLI*

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