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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007538 Open in IMG/M |
| Scaffold ID | Ga0099851_1001222 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10847 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Chesapeake Bay, USA | |||||||
| Coordinates | Lat. (o) | 37.0516 | Long. (o) | -76.083 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033250 | Metagenome | 178 | N |
| F038464 | Metagenome | 166 | N |
| F045425 | Metagenome | 153 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0099851_10012222 | F045425 | N/A | MADLTPYSARWTGPVLIQRGEDTTVSVAIEHAGTAPTVSAVVLSLFDSSGNTVLDGETASESGGTLSYTVSAATTSSATLGAGWLVRFTATIGGDDHPFFNDAALCASRLYPPVGTTDLTNRYSRLASLQTTGASDLQKFITDAWTELTTRMYSEGLPFWRMRTPSTMRPWLTAQALVYALNDLALTLGGGGPYREEAARIEATLPKLYGQIRSLMDSDEDNHVSQERQPVSPVLILSSGRSTRYRG* |
| Ga0099851_10012225 | F033250 | GAGG | MNITIGITKQLSPVFETGRVDLSALLPVLESHAAVMVEDARADWPVDTGTSRDAWQAEVSATETDLSVIVFNEAERRGRGYSVYVHRAGEARLVWTEVLERLTLNLIPSLQADIVLTLAEELRR* |
| Ga0099851_10012227 | F038464 | GAG | MDTLTLSPLGDLTVARPASWAVLADLAVSWPHDPGAPDFRIKQMRCAAAAIGLVVNDERLPLPKYRPATLDLVAYGESVLEVLIPRRVQLSTILRAGRVAGDWLSDALPTEQEVAETADFSVRAV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |