NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099851_1007121

Scaffold Ga0099851_1007121


Overview

Basic Information
Taxon OID3300007538 Open in IMG/M
Scaffold IDGa0099851_1007121 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4655
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003361Metagenome / Metatranscriptome492Y
F006940Metagenome / Metatranscriptome361Y

Sequences

Protein IDFamilyRBSSequence
Ga0099851_10071214F003361N/AVKLTLNGALDLSKAINSQTIWNKRSNDFFNKLALELKEDSLNALENQPSPRSQAGRGNKNTGNTRRSVFTAKLGNTNRLRMSEGFKLASSSPTAPFIHGKPIYRGFSPVKRTKPFFPPYKEGSSLAKWAKRGTPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKAGAEDMLESIARDIARSVK*
Ga0099851_10071219F006940GAGGMKRLKLDDISNAPALPTKEIEISQWDATVIVTGLTKADAVEINKLSEVDGVRDEVLFEKHLLLKGLKDPEFNTLDQVEEFYSKATPTIVDTVLVGIYRCMAWTKEDQANIADQFP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.