Basic Information | |
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Taxon OID | 3300007539 Open in IMG/M |
Scaffold ID | Ga0099849_1000959 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13504 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010091 | Metagenome / Metatranscriptome | 308 | Y |
F022423 | Metagenome / Metatranscriptome | 214 | Y |
F040134 | Metagenome / Metatranscriptome | 162 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099849_100095922 | F010091 | GAG | MNIDEMLEEAEKGKNSAIFKRITKEAEPFWLGCEERVLAGKTIKPYVVSRLLKEHFDVKISETAIRNHFANLLANNVE* |
Ga0099849_100095924 | F040134 | N/A | MTHNNVKSKWTLTSIEYSGLGDKPYFILSNEQGDVKLVPITRGVHNLKDLLDLEEE* |
Ga0099849_100095926 | F022423 | AGAAG | MQDLNFITQTVAEMTSRVESTETVNKIIGTANQYAQIKKFPASKELWSDEQVGAYLDMIERMLDLPTEFTQAEFETMSIQEKLSAAGIETVDITNGPQTPEGIVGEVVNQMAEQNKYRDDLKCPYCQQMVYDNRNSKRSDKSPDFTCSTNDPTICGGHTGKWRKSWWIDNSDIPEEWGI* |
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