NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099849_1109660

Scaffold Ga0099849_1109660


Overview

Basic Information
Taxon OID3300007539 Open in IMG/M
Scaffold IDGa0099849_1109660 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1094
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0099849_11096601F001655GGAGMKQPDNDHAKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPE
Ga0099849_11096602F002858AGGAGMSIDEKSIYLVDGGDYQIYCLGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDKGNVVMPRVVLDKILFIASDELPQAESEL*
Ga0099849_11096604F024320GGAGMTIDEYATESGVLDDNLGPTEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLLVELHGEHWRDAL*
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