NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099847_1005427

Scaffold Ga0099847_1005427


Overview

Basic Information
Taxon OID3300007540 Open in IMG/M
Scaffold IDGa0099847_1005427 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4320
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F032859Metagenome179Y
F078540Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0099847_100542710F032859GAGGMSFGGGGSGGSSTVAAHTHNSALSGDGGALSTTLTQIDTSNLYTRIIVGA*
Ga0099847_10054275F078540N/AMVRFNEALLVGISLLAALVFSKGRGSSPSLSNIPFINPFTDLLSKAQAQAIEKQESNIGTLENIRQSNLGIAQDILDYEKNISNVKINQLQTELDKTQSFISQQQKVQMGNLFGLGGTGKSLLNKFDSSYKYYSRVWTGEKGPLNQVSIYPDVYIPLNQSVRAGFAQQAAYEEAQQRIATANELVFRQQGEIDRLQEEYQTRYGNLSRYG*
Ga0099847_10054279F004537GGAVDIMAFFSKPINNFQVNSGNTPLLYPVRVICAAGVTTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFATIDNTIVNYLTITAGAAGTTLVEAQVLPASRDEVPIEVTV*
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