Basic Information | |
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Taxon OID | 3300007540 Open in IMG/M |
Scaffold ID | Ga0099847_1005427 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4320 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.1 | Long. (o) | -76.0972 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004537 | Metagenome / Metatranscriptome | 434 | Y |
F032859 | Metagenome | 179 | Y |
F078540 | Metagenome | 116 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099847_100542710 | F032859 | GAGG | MSFGGGGSGGSSTVAAHTHNSALSGDGGALSTTLTQIDTSNLYTRIIVGA* |
Ga0099847_10054275 | F078540 | N/A | MVRFNEALLVGISLLAALVFSKGRGSSPSLSNIPFINPFTDLLSKAQAQAIEKQESNIGTLENIRQSNLGIAQDILDYEKNISNVKINQLQTELDKTQSFISQQQKVQMGNLFGLGGTGKSLLNKFDSSYKYYSRVWTGEKGPLNQVSIYPDVYIPLNQSVRAGFAQQAAYEEAQQRIATANELVFRQQGEIDRLQEEYQTRYGNLSRYG* |
Ga0099847_10054279 | F004537 | GGA | VDIMAFFSKPINNFQVNSGNTPLLYPVRVICAAGVTTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFATIDNTIVNYLTITAGAAGTTLVEAQVLPASRDEVPIEVTV* |
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