NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099847_1019685

Scaffold Ga0099847_1019685


Overview

Basic Information
Taxon OID3300007540 Open in IMG/M
Scaffold IDGa0099847_1019685 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2204
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074580Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0099847_10196852F074580N/AMELIVKQDMVTRTKFPQNISDADFERNRLLVQENDLVPYIGTACLNAILALDRESSTDQAKQLYAFWRDFVLPYMTYAVYGLFIDTHGYTMAPAGFTGMATGGPQNANPLDEQGRQALKRQYERFTSTALTKLQNEFADKNKTFDSVTYALDENVRDERPKAGGLTAVGSIVDRIGIYRKIRV*
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