Basic Information | |
---|---|
Taxon OID | 3300007540 Open in IMG/M |
Scaffold ID | Ga0099847_1022776 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2032 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.1 | Long. (o) | -76.0972 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F024886 | Metagenome / Metatranscriptome | 204 | Y |
F028516 | Metagenome | 191 | Y |
F041433 | Metagenome / Metatranscriptome | 160 | Y |
F084085 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099847_10227762 | F028516 | GGA | MLYNKLKPEIKTRLHKNSNRYAVSIQGIVKALKTKRYYNELTIGEIKQIRAFGDVLSTDILWGDCFFNN* |
Ga0099847_10227765 | F041433 | N/A | MTQVEFNKLSKALDFMCKDIMKSKGPEYTQEDTDMLANFKNTAERLNTTELKIWGAYFDKQISSIYAHLNNANLKKAETIESRFADIINYCHLGLALFKERVK* |
Ga0099847_10227766 | F084085 | GAG | MCKDTMITLLSIVEKDMKRRIEHSYFESESDKWSKFHDNIREIILTIKNGGIK* |
Ga0099847_10227767 | F024886 | GGAGG | MKFKHDTMFSVNVSINGRQKYTINTTDYDYLCEKLTDVYIKETK* |
⦗Top⦘ |