NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099846_1224269

Scaffold Ga0099846_1224269


Overview

Basic Information
Taxon OID3300007542 Open in IMG/M
Scaffold IDGa0099846_1224269 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)657
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097249Metagenome104N
F097261Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0099846_12242691F097261N/AGRYHETVDEFVSRSEAERMCKEYQFGEHGRAYFYVSRVARPNWTV*
Ga0099846_12242692F097249N/AMKFSVFDLPRGCTEYVQLPTGRCINVHVARLASRTEVHVQANSEQWPQEYSDSFVHCKRCVHVMHSASKNLNHQEIEYLQDRYFRPYTELTFA*
Ga0099846_12242693F097261N/AMPYYINRQSGRYHETVDEFASRSEADRVCKEYQFSEHGRAYFYVSRVARPNWTV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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