NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102873_1011062

Scaffold Ga0102873_1011062


Overview

Basic Information
Taxon OID3300007545 Open in IMG/M
Scaffold IDGa0102873_1011062 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1547B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2785
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2314Long. (o)-123.8828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F007921Metagenome / Metatranscriptome342Y
F021988Metagenome / Metatranscriptome216Y
F073565Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0102873_10110621F073565AGGAGMSDGQNLTGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK*
Ga0102873_10110622F001280N/AMCIECGCNIFGVADLAPATIVDASRDGESGLTLDMTSTPEQTRQFINE*
Ga0102873_10110623F021988N/AMSNFQKEDGTGMTTPPAAGAASGAVTSRETPKRYPRQGLKIDTNKHGIRRETNLNQQPKKGRPKKV*
Ga0102873_10110625F007921N/AMESLHGKRIQRMIDWLVNRIFRWDPLRKAIFDEVRLYQSVDRSMWEYEKEGPSNLTWSEGDKWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREEAESK*
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