Basic Information | |
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Taxon OID | 3300007551 Open in IMG/M |
Scaffold ID | Ga0102881_1006551 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3315 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2322 | Long. (o) | -123.8817 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002092 | Metagenome / Metatranscriptome | 594 | Y |
F015599 | Metagenome / Metatranscriptome | 253 | Y |
F018537 | Metagenome | 234 | Y |
F018924 | Metagenome | 232 | N |
Protein ID | Family | RBS | Sequence |
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Ga0102881_10065514 | F015599 | GGTGG | MKLTIKNYEKLFRREWDDKNYIEDIDERRDEYRINVWRGNMRHFIILNRRPVENGYYTIGKWSNEAFCVRYPYWIKHEDIVNIDSLMDKLKLMTDEWKPKLL* |
Ga0102881_10065516 | F018924 | N/A | MTNSEKAIAQLFGVLCSVIKSEHTPQQTKQATINTFQHLIGEDGSPFLDDELIKLSTAMDMEMQSIVRQLNGDRMLNEVLSNNVNLN* |
Ga0102881_10065517 | F018537 | N/A | MAANRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWRVAQYIDIYLHHDNPNRIRIWKKQGMERKNLQLNDTNVMIARTLGSMGYSLADGVKHTKQSRPSSPLMAIRELQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNRVSFSQLKSHYDIVMRGNATTQNGGSFIHHLHSLIDMRNAIGRRCGRYLYKDTDGKYKVSNI* |
Ga0102881_10065519 | F002092 | N/A | MRTTNQKAIEYLNGNPIVANFINKVNIQRKDHYVKADMVSQWKELIVEVGQKYIRLWVGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL* |
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