NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102881_1056214

Scaffold Ga0102881_1056214


Overview

Basic Information
Taxon OID3300007551 Open in IMG/M
Scaffold IDGa0102881_1056214 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1549B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2322Long. (o)-123.8817Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022084Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0102881_10562143F022084AGGTGGMKHIEYLKRLFNYIESKGYTVDCECEGEGITQDEALTQVDDAHIYIIDKDGYSLGWIYWTYWNDWDESISDYTLELEKILKLDEFIEWNVE*

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