Scaffold Ga0102817_1023963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102817_1023963

Scaffold Ga0102817_1023963

Overview

Basic Information
Taxon OID	3300007555 Open in IMG/M
Scaffold ID	Ga0102817_1023963 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1351
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089155	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102817_10239635	F089155	AGGAG	MIDIYDCFQRTWWKDNPDYPNGLQPHAGEKDFYFKNAVGSETHAFFTEQEAIDFCRQWNDTHDAGRYSLKAEYQDRPEPIITEDI*

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