NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102817_1079538

Scaffold Ga0102817_1079538


Overview

Basic Information
Taxon OID3300007555 Open in IMG/M
Scaffold IDGa0102817_1079538 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F084220Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0102817_10795381F009493N/AMKKRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGYNTGAAYNSFRVTAYVRYRYDLDNSIIAIKFTSDALKTLGWIKDDSPKYFRRLSMVWSEQVPKDKAEITIE
Ga0102817_10795382F084220N/AMDYLSRELEDYQYYVDTTCEKCGESKDPEYYDCRCEDEEEEE*

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