Scaffold Ga0102947_1000816

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0102947_1000816

Scaffold Ga0102947_1000816

Overview

Basic Information
Taxon OID	3300007619 Open in IMG/M
Scaffold ID	Ga0102947_1000816 Open in IMG/M
Source Dataset Name	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10945
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4962	Long. (^o)	-122.1329	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105217	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102947_10008167	F105217	N/A	LEKGVDTIKEKNELVDSIQFRLFYAEINLDKIPVAIPLDIFPKDKISSEIAMDGFLFYANGALDLIFTEINKKLDLGLALNQINPSDIVQALEKKNSDETKKIIEVFQKNFQKPVHEEKIITDKEFNDGLNRYGYDVIGFHAEYENRDQVKYQHFWNRASSRLWEIRNQENLESYDSLLKNAGQKGTDKPRNHLRVKLASDDRPAVYWDSAHYENPKRYFTNILFLVKKFIDKILEILKPLYLPDSKTP*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.