Scaffold Ga0102947_1027888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102947_1027888

Scaffold Ga0102947_1027888

Overview

Basic Information
Taxon OID	3300007619 Open in IMG/M
Scaffold ID	Ga0102947_1027888 Open in IMG/M
Source Dataset Name	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1695
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4962	Long. (^o)	-122.1329	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006571	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102947_10278882	F006571	AGGAG	MKTDFHCTPEACPEASLRVQLVQIEVSPAHPLLVLKRALPWEAITEVMTRHWREHGKNVDGGPGLPWDVSLYAPLVVLMIIKSFDSRQMETYLAENVVARVFIGRHHEIEAQIRDHSNIARAYAALGKAGIEEVTHLVIHQAHGFGFVDEGVMSSDTTAQELPIGYPNEPGILRGLAQRCGRALRRLKQRGIQGLE

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