NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102865_1010979

Scaffold Ga0102865_1010979


Overview

Basic Information
Taxon OID3300007639 Open in IMG/M
Scaffold IDGa0102865_1010979 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449C-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014610Metagenome / Metatranscriptome261N
F041507Metagenome / Metatranscriptome160N
F078766Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0102865_10109791F014610GGAGMPIYTFENKGQSVEQIAPMGTDSLVIKGERWTRQPVARFGVTGFARESELKDKVKQGFSRMEDRQGTRFESTFSKNQIRKIWDI*
Ga0102865_10109792F078766N/AMIAIPVEALSTDTEDGQQASPEVGDEVVLQEVRGVLKKLENGEAYVEIQSVNGMPAEYEKAGKESMEPMDEEGMRNMVSEYDSEMES*
Ga0102865_10109794F041507N/AIRAEREAVRREREEWIKQREQSTVADTNSFWDEKGYTAEDYEAAAKEFDADGDSQLAKAARAKADGVRKTVSVKQQQVQQERFTKTWADNFNKLSEKETWLKDQSTPEYKRTVELLQRIPILTTLPNGLAHAVELMKLQDTAGRFQSVEAENKSLKEQLNKLQQKTAIGKSVPAGQLKAEEKDFSKLSQKEQRDALMRATREFDRESNQ*
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