Scaffold Ga0102865_1013313

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0102865_1013313

Scaffold Ga0102865_1013313

Overview

Basic Information
Taxon OID	3300007639 Open in IMG/M
Scaffold ID	Ga0102865_1013313 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2298
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102865_10133131	F002162	GGA	MPNYEYECDREGLSIVLDLPMKHEIPLCQGCGFKLNRVFTAVPAIFKGSGWAGKK*
Ga0102865_10133132	F004599	GGAGG	MFNLADYEDVATLNKWFISHFPSGRSDISVVSHDAEKGYILVQATLWRDSKDEQPAVSNLAFGSRDLYIQNMRKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDEFKPKYSAAGSQARAMEQALYLVDQKEKKNEPAPVEWSIGDVVADIGSNKPAAEECKHGQMILKEGTAKTGKPYYGYVCSAAKPDQCDAKWAKITANGKWFFEGGE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.