Basic Information | |
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Taxon OID | 3300007639 Open in IMG/M |
Scaffold ID | Ga0102865_1013353 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2295 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2327 | Long. (o) | -123.9168 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019478 | Metagenome | 229 | Y |
F022886 | Metagenome / Metatranscriptome | 212 | N |
F030763 | Metagenome / Metatranscriptome | 184 | N |
F053288 | Metagenome | 141 | N |
Protein ID | Family | RBS | Sequence |
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Ga0102865_10133532 | F030763 | GAG | MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAIVREPLAEATETFETAYHFSLVEDDVRPANIIEDVIYHSVLEDMELFGESLVHYLNTL* |
Ga0102865_10133533 | F022886 | N/A | MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVNSVYDAIVDVVVRHNLKVRV* |
Ga0102865_10133534 | F053288 | N/A | MITIKNYNSDVGHATFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNSKKRTKHVVSEDLHEVYIQDMVSDKWRRTVNLEKRSLNKSAFYNWVESVIDDEYPLPF* |
Ga0102865_10133536 | F019478 | N/A | MVGTQFWNGRFTCLRVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFENWKNVTKTFGDALKKQF* |
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