NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070751_1313808

Scaffold Ga0070751_1313808


Overview

Basic Information
Taxon OID3300007640 Open in IMG/M
Scaffold IDGa0070751_1313808 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)582
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074826Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0070751_13138081F074826N/AMLNDAVQYDVTRLMSALGKIDPALRRATQAKMKLAAKPMVAEARSLVPEDSGLNWGNWTTDAPELGKAGTGRVIGTYDAKKIRRGIKVTYKGPSKRDRGKEIFPLLTLQNTDAGGAIFDIAGKANGAGKGSENRRRGRAMIAKLRADNGHASRVVWRAAERHLPTVQRGVADAIKDMEEAIQA
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Institute for Fundamental Biomedical Research
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