NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102823_1135157

Scaffold Ga0102823_1135157


Overview

Basic Information
Taxon OID3300007692 Open in IMG/M
Scaffold IDGa0102823_1135157 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)654
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019252Metagenome / Metatranscriptome231Y
F041190Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0102823_11351571F019252N/AMRLIDQVKPEVLDALAESKIEFSSSYRRIILSLESVERYKQLTIDDIQTLICFLPSEFRPQCDLDWYYGDN
Ga0102823_11351572F041190N/AMNAKDLELKISGLQQMIEEKTADASRFQDELKVTQKKLEDINKPELTPLQFDLIQEAIERGVDEFDFSDTGNFDIEYGIEYDGKVHCESHDLNETFELVEMITSRVHKLFTEAECPEEDDNSQLNNATHVEKVI*

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