Basic Information | |
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Taxon OID | 3300007716 Open in IMG/M |
Scaffold ID | Ga0102867_1010621 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2305 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2311 | Long. (o) | -123.8825 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004431 | Metagenome / Metatranscriptome | 438 | Y |
F009143 | Metagenome / Metatranscriptome | 322 | Y |
F011386 | Metagenome / Metatranscriptome | 291 | Y |
F045755 | Metagenome / Metatranscriptome | 152 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102867_10106211 | F011386 | AGGAG | MKLTITTMQGNTRNIELMTTQGVHDFIELYNSTLHPNQRVKVTCDLLGIDGYLQGSC* |
Ga0102867_101062110 | F009143 | GGAG | MMTKWDTIQLDVADQYIYIDEEEAYNKALEEGNISLLDVNDFDEDELSKSLTLDWEAYE* |
Ga0102867_101062111 | F004431 | N/A | HYNQLTKEEQTMTITYSLWDGAQLLGAGLTANSADEMNKVVADLQKVSTNVVAHMRKVTQN* |
Ga0102867_10106212 | F045755 | GAGG | MSEIAGMWICDNCDTLAIVSVETDTILVTQCECVSKERNK* |
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