NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105669_112545

Scaffold Ga0105669_112545


Overview

Basic Information
Taxon OID3300007730 Open in IMG/M
Scaffold IDGa0105669_112545 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_RNA CLC_assembly
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)581
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial Seamount, northeast Pacific Ocean
CoordinatesLat. (o)45.9372Long. (o)-130.082Alt. (m)Depth (m)1500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008173Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0105669_1125451F008173N/ANEVENVVAEISERYGRFQDIECRQLKDTLVGIEDSGPGGAGRVRVSDFYKLAVDHGKWQFSESLDYLRNMGALDESDASKPSVIIPNYISGPSNCVASSGFYSVCCLDECEGILSRLEQFIAAPEASATQIAAFISNIPSATMPSNRKLSPWLHQRLDELDEHHKGRIPLHGRLFGQWMHYAYPRECAFPHIS
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