Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1419 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1419 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14856
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (76.92%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

14856

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (76.92%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F036209	Metagenome / Metatranscriptome	170	Y
F048270	Metagenome	148	Y
F058100	Metagenome / Metatranscriptome	135	N
F090105	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_141914	F090105	N/A	MSFLTWFAHSPIASFIKVFGAGVLGWVLINADTLGFHPALTIGLVSALPIIINWLNPEYDNYGRANVDETD*
Ga0104986_141916	F048270	GGA	MDLLLLGQYSAAIITVATLIGLFVKWAIVKPIKLYIDTMTYPIQPHANGGKSLPDLINKVDALHVVVQNHINTNHDTPIYSKCLCESCVSC*
Ga0104986_141922	F058100	GAG	MMENKDEMFISILKKLYGAYEASHYFAESCEVCHETLVPFDTGVDPYTDTRTWMTKCCGVVNTYNQKLSPQI*
Ga0104986_14195	F009679	AGGA	MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVSIVGASLTNNTARFYCHNNTFVVGQALTVTGCGSPFNGSRTVTKVGYDEYNVTYFEAAITNADITKRSIIPNGRAVLTSQAALYDSVPEVRESALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG*
Ga0104986_14196	F009746	GAGG	LANLATYRDALAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGSRCHVRFDITVIVNAADNRAALANLETLIFSVTDLLANNISLLGGWSQPTVTQIGNADMLISQLNIEMVTTN*
Ga0104986_14197	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMYLDDTSSAGIISALWDAAKNAPDTPLAFSFDVNGDTFTGNLFPTFPTVGGAATDVLTTSISFVVEDGSVSRA*
Ga0104986_14198	F009265	AGG	MQYTVTTKQGNNYIVSDESAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPSQQAWVTNEFETFEVVEESPKDNSLTDSSE*
Ga0104986_14199	F036209	N/A	MDMAERQTVKIQPDQSDLRNLYKAFRKMDDNSKLALKDEVTSISAWSAGELQNSYTMNPYPDQAQKVAATIRANKDRVPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFANGGRRFPERSAPQGRGNVGYGIFKVLKQIQPELTARWKQAIDRHVIKVWDQNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1419

Overview

Ecosystem & Geography

Associated Families

Sequences