Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1526 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1526 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16633
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (65.38%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16633

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (65.38%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F013618	Metagenome	269	N
F028151	Metagenome	192	Y
F055549	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_152618	F028151	GGAG	MNLYNEVKDFGYLVMWSIVVLTIVAWIVYEIRDTAFQNGYWKGRADGWNMHRRMTEIKSKSDEVFDYDKN*
Ga0104986_152620	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISADPEKGYILIQATLWRDSKDAAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVEANPTFKEKLESRQNMYGKSGSKSAQIETILRDSFEADKSKEPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPKWAKLTANGKWYFEGGE*
Ga0104986_152621	F055549	N/A	MTDYFMRAICFGAITATQLTGFLTMPNYDYECPGEGEVIVMDLPMDHKTPKCQVCGAEMRRIYTAVPFILKGTGWAGKDG*
Ga0104986_15264	F001834	N/A	VPSTILSSIRTPLATALAGVAGNVYSYVPESVIPPAVVVVPDSPYLELETINKSTIHTKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPAGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTA*
Ga0104986_15269	F013618	GAGG	MSVFTPEWKLTVNGVEYTDVAIAEITHQSGRDDIYAQPLPSYLQFNLVSLNDENYNLQINDGIALQVKNSTGTFITLFGGNITDLTTEVATASSITKTYSYTILALGSLAKLPKIITDGILAQDDDGDQIYALLADLLLNNWNEVPAAETWSGYDPTTIWANAENAGLGEIDRPGQYTMENRTSKPDTIYNIASQIANSAFGVLYEDNQGRIGYADAVHRQNYLANNGYTDLSANTAIGSGLRTLVRSADVRNDIYINYGNNFGSQKTATDATSIANFGYKGETINSLLHDATDAQAVADRYIDLRAYPRPLLDRITFPITNSEIDDADRDALLGIFIGQPLRITDLPVQIAPTGQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALQWEQVSASEAWNTLSAILTWENAIGAVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1526

Overview

Ecosystem & Geography

Associated Families

Sequences