NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1598

Scaffold Ga0104986_1598


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1598 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)18802
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (40.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011285Metagenome292Y
F018912Metagenome232Y
F073084Metagenome120N
F102547Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_159811F018912N/AMTKKIITDEMIADYHKAVIKFNEDIKKERKYRQTLCENFIADWADIIEEIGIRNRKELNNEK*
Ga0104986_159816F073084N/AMEKKDKIINWICNDYITNIKEKDWPKESWYYVIEKAFDLYNMTLPELKKFKIELTKK*
Ga0104986_159818F102547AGGAMKAQFNIIYVPEKINGVENVEKKSVCRSGLLDDKTKIFTTTKGEIAFCYFDVDRNNYRTAKNKWTINIRG*
Ga0104986_159829F011285N/AMKYLFVFLILIGCSKDISFDPTTTIVKQTIKFLYDESSKEKPVMEIQY*
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