Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1629 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1629 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20264
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (23.68%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

20264

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (23.68%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F016966	Metagenome / Metatranscriptome	243	Y
F029411	Metagenome / Metatranscriptome	188	Y
F038202	Metagenome / Metatranscriptome	166	N
F040100	Metagenome / Metatranscriptome	162	N
F040616	Metagenome / Metatranscriptome	161	N
F041760	Metagenome / Metatranscriptome	159	Y
F046321	Metagenome / Metatranscriptome	151	N
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_162910	F012446	N/A	MKDIPEKFVKNCDLVGNNTFIQIKKEGNVYMYRRERMDGTIKSYEVFLGKFIAKGTPLPGGVVEKEDRIQYPGSAQFGKTAYDCKTEAQAEQRFEELLKKSANQAEAKEEAAKTGVRNRGRRGASKKIKLDMTLNKGTKFTAKFLMTVLGVTQPVLFPIIKQWEKDGVIKANGTVKAEGKGRPSTEYIVV*
Ga0104986_162912	F015582	N/A	MSDINPELVAEQAEDAKYLQELNHYVNTLSAPSAEAVALYRSKLSMLEDIHNEIRSKYPEFMPEYDPSMDAELNQSLGKYQEHTYSLSSRDMRSE*
Ga0104986_162918	F046321	N/A	MTNPIYKLIGYVIGVLVGNGIIMWVYNSILPEMYGFKPIGYWQLFGLYLICGYLFKTHNVNILNKDK*
Ga0104986_162919	F038202	N/A	MKIKVTDIVYDTDIDDDSTTFVLNSDLPSEMIVEVDGIIDIESEIADAISDTTGWCVSGYNYEVL*
Ga0104986_16292	F029411	AGGA	MNADFNTIDPQNELSDLYTPDYREEALNEDRYLEMAYEDRFEMPCMEDYQ*
Ga0104986_162925	F041760	N/A	MTKVLAVKYPSSVDRVRQSFDHLRQVFDVPDVSTIKDMFGSLLFNDNQTFRYNYCLVKYNNELFIIEPVDLSKCTYVRKKIEFHPLQHMV*
Ga0104986_162927	F040100	N/A	MNTDLTVLFKTITESVPNYIMFIILIVLGYSLCVAFVKTLSDNVVKVVLAARAPVEFKIRDGSDTEK*
Ga0104986_162930	F016966	N/A	MNKVTFKRVVNQSLPNLYSGTINGEIVGFIYKPNDSKSDRNAWRSYVGVGDNAKFLYHTWDMNDAMEAVQLAVK*
Ga0104986_16295	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEASDYYNE*
Ga0104986_16298	F006181	N/A	MKKNLIHVIYPDEATYSYVATNDMSVEDNLERVFAEWNHGSGMECEMFIKSNKRSLSVNDIVCVNGKYFQCQSFGWKKVTMEYVNELEKEVSLHPTRYAYGTWYALTEIMYGRRHDDNEALLEGVETV*
Ga0104986_16299	F082581	N/A	MNSTSTKTSKVGRPAKALKLILNKSFTIKDLQTLNPDIKFVTIRAAVLRGLSNGKYTKLPRNVQTGKKGKPANIFINTKVYKANLANLAKTKAVATVTAEVVTEPVVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1629

Overview

Ecosystem & Geography

Associated Families

Sequences