NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1674

Scaffold Ga0104986_1674


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1674 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)22308
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (70.00%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F003112Metagenome / Metatranscriptome506N
F004760Metagenome / Metatranscriptome424N
F008071Metagenome339Y
F010603Metagenome / Metatranscriptome301Y
F039992Metagenome / Metatranscriptome162N
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F086661Metagenome110Y
F091592Metagenome107N
F096882Metagenome / Metatranscriptome104N
F098923Metagenome103N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_167410F039992GGAGGVSLDEVSELKDRVAGVSERLARMEERQVTLYHMVERSLSNFGDLSNRVNAIEGLKTKMLLVAGGLGAIISIAWDFVKSKLINGG*
Ga0104986_167413F000635GGAMTLTEIAQFAGEKVGKTDSDTLTFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTITLGTNVETPLSVSFDQSEVDPIDLATIISQDADLLENTRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPDTNALNDELRLPHVHQVVLALTHADALERERQYAKAQAVVQTANSDLAMMANYELSQVGGVKQITPVSLGDLMTEEITAA*
Ga0104986_167415F008071AGGMTAMEFIEKSGVPESRWPNFKEWFEWYEKNNLVGVVKNGDEITGVAIARAVDASQDVAHYKHDYNAPDAFVDLTVTCIDGKPNARSLLAMKCLLSILWDELGPRRSLIFNRNGKRKQYDYMKFMRKVMV*
Ga0104986_167423F096882N/ALKESVRAWRTFEDALKNLDSFEACAKWVIDNPQICKKLSGAGLMAVMAEDLEKKKH*
Ga0104986_167427F039994GGAMENPPTISEMGEAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPCPDEAGETSLDHLERAVVRALFAWMQLKKGLPRL*
Ga0104986_167429F039993GAGMKLAIAWICYWIGDFISITIMRYGYGYSLYNKLMLLSSDLDDNGVIWK*
Ga0104986_16743F004760AGGAGMPVYQYEDTRNGNVIELEKAVAERDKVPRYLKRFQVPARLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRYTPDSIKRAALRSK*
Ga0104986_167431F102824N/AMTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFDNKESAQNAADLWNAYHLWCKDRSGKRKRR*
Ga0104986_167432F091592GGAMISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKMAGVRIDQATLNRVIKRGLGNVN*
Ga0104986_167434F057984GGAGMDGLGQIKILAEREVRMVELDIEVDDKTKQEVCHAAWCEISNDNDALFNYGFNQAIKRFIQTKGKKCTHKKSSNKKRSQR*
Ga0104986_167437F098923GGAMFFYEEIDRRHIDALADILEDSDVVPGKLMGKEAGPLAWIMNQMLYDKFHGHGWKLDLLTGRFVQTGE*
Ga0104986_16744F010603AGGAGMANEFVRSQRKAKGRALRFDAQGFTNVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0104986_16748F086661N/AMPSNIIWNIDSTSFVKVDNRTRDEANAECIDILKRLTTECLTSAGLDTATQQNAALGIYSPERCEAIKNYISACRNEYLRCKGLILAATTNDEADAVQFVAPEVPEGL*
Ga0104986_16749F003112AGAAGGMCKRLATWLTNLSLRLLMTRSEYACFKEALKFATENNTMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEIVDAVVHLAVALKYLEGRGRES*
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