Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1738 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1738 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	27162
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (68.75%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

27162

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (68.75%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F017290	Metagenome / Metatranscriptome	241	N
F028151	Metagenome	192	Y
F037698	Metagenome / Metatranscriptome	167	Y
F055549	Metagenome	138	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_173817	F028151	GGAG	MNIYNELKDLGYVIMWSIVALTIAIWIIHEIKETAFQSGYWKGRKDGWDMYRRMAETKRKSDEVFDYDKQN*
Ga0104986_173819	F002357	GGAG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDAADPAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKAGSKSAQIETILRDSFEADKPKDPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKTKACEPKWAKLTANGKWYFEGGE*
Ga0104986_173820	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVIVEPSTIKCDTCNDDRLLHEGDLLRCYVCHTINRIPYPVHKDLNA*
Ga0104986_173822	F037698	N/A	MRILDVRRSGVPYMCANHDEMTHQINWAYQNKLREQWLLNNPDAQYIGWMSI*
Ga0104986_173829	F001834	AGG	MPKQTILSQIRTPLATALAGVAGNIYSFVPETVIPPAVVVVPDSPYIELETINKSTIHAKLNYTISVAVAYNSNPASLDNIEQLIMSVLAVIPTGYIVSSVERPTVQQVGASTLLIADVRVSTYYTQTA*
Ga0104986_173830	F017290	AGGAG	MATTVITGRNISLSFTGGTDIEAQATNAVLTKNNVRQAYETLDGVAYKTVDITGTFQLDMLADWGKASSVCEALWTAAESAPDTDISITLTTATGAQFVFPIKPEFPTAGGSGVDAQTVSLTFTVAGGAVVETFS*
Ga0104986_173834	F000468	AGGA	MTVWTPDWKLTVAGVEYTDLTISDISHQAGRTDIYTQPNPSYLQCTVLALAGNTINFDINDSLSLQVKNSAGTYVNLFGGDITDITVSVGATGSIATVVEYTILAMGSLVKLAKEIYNGTISQDEDGNQIYDLLSSALLGAWNDVPAASTWAGYSATETWANAVNLGLGEIDQPGLYTMENRAASPDTIYNIASQIANSAFGYMYEDNEGNIGYADADHRQTYLITNGYVDLSANHALGSGLRTTTKAADIRNDIFINYGNNYGSQKTATSTSSIALYGYKSESINSVIHSAVDAQEVADRYISLRAFPQPIFDSITFPITNPEIDNSDRDNLLSVFMGMPLNIADLPSQINNGEFSGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPVGERWNTLSPTLTWEYATIVA*
Ga0104986_173845	F002357	N/A	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDATDSAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKAGSKSAQIETILRDSFAADKPADPVVWSVGDVVAEIGSSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPKWAKLTANGKWYFEGGE*
Ga0104986_173846	F055549	N/A	MTDYFMRAICFGAIPATQSIEFRIMPNYDYKCDGEGLSIVLDLSMEHEIPSCQVCGAKLRRVYSAVPAIFKGTGWAGKGG*
Ga0104986_17388	F000468	AGG	MTVWTPDWKLTVAGVDYTDLTISDIIHQAGRDDIYTQPNPSYLQCTIVALAGQTIDFDINDSLSLQVKNSAGTYVNLFGGDITDITVEVGRTGSVAAVIQYTILAMGSLVKLAKEIWDGNIPQDEDGEQIYQILSSVLLGAWNSVPAASTWATYDPTETWANAVNLGLGEIDRPGLYTMQHQPSTTDTIYNIVSNIANSAFGYIYEDNSGNIGYADQDHRQTYLTANGYVDLTGHHAIGSGLRTTKKAADVRNDIYINYGNNYGSQKTATSAASIALYGYKAESINSLIHDAAGAQEVADRYISLRAFPQPLFDSITFPITNPEIDNSDRDNLLSIFMGMPLNISELPLQINNGQFQGYVEGWKWSTRFNELFLTINLSPVSFSQVSMRWNAVPIGEAWNTLSPTLTWEYATIVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1738

Overview

Ecosystem & Geography

Associated Families

Sequences