Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10367 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10367 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14240
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (87.50%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

14240

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (87.50%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F040479	Metagenome	161	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1036710	F009331	AGGAG	MICQNCMKGGEENSAAHYKRSAHWHEKCDYKGCVCQHKTGPGYVKRDGSKVPLMQTQSP*
Ga0104988_1036714	F040479	GGA	VNPASTTLLAQETLRANQEARLTELLNSLESVVDNLNFKSFTVYDTLMLATENLRVALSNIATEEAGTDTL*
Ga0104988_1036715	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTIPVVGVRIRTADGRGAPVLKDSSNEGTNQGNDGGEA*
Ga0104988_1036717	F068766	AGGAGG	MTENVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGAQ*
Ga0104988_1036719	F023834	GGAGG	MSEPTVDYWRAKAELCRDLALAQIIDGDEKMEKEAGMNLMRMVHALSMVDTFNEGGSDD*
Ga0104988_1036721	F026864	AGGAGG	MSEQDKMAQFVFTVVVIPDNKRYEVELWDFAGAKPDLIAAGEGTNWRTALGEALSRIELPTDKVEKTINDVIKEGVEDGAL*
Ga0104988_1036722	F005558	AGGAGG	MTTDQDSMSWSELAELTHATQIERFNWCMCEDNEGNENPYNDCPKEAE*
Ga0104988_1036724	F020863	AGGAGG	MQTTIEEVRSLVAALEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSHYGSGHCEPRGFSDYLGGSKAEAAHTLRKLIAGIRTGLLIAEKKEVKS*
Ga0104988_103679	F016642	GAG	MLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASVTDTAWNVPWYPNELHPRRAKLPDVGVNFEVRTLRTRDSVPFWNKDEGKIIVGTKILDEDYYSQVEVYGWCNPAEYATSQYRDETISGWRVPVTELKEFK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10367

Overview

Ecosystem & Geography

Associated Families

Sequences