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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007735 Open in IMG/M |
| Scaffold ID | Ga0104988_10388 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14479 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F004695 | Metagenome | 427 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104988_103881 | F001915 | AGGAG | MEWRLCDPLTDVQDVVDLADCIYGHEADGVLTRDREVFRKNVTLAAVYQAFDRTREFLSCCYDDKRLLGYCWYDRGGYTTYAREEISNAKFHHVDLRLPAKQRVKLLHQMIDQHILWAGHCGVPVICSTSIRGEHDGFMRIHAKRGFRVSGSYAWGRTEELLKGLHV* |
| Ga0104988_1038811 | F004695 | GAGG | MLDKQNVIVPNIAATGGLQNTMIEKVAHEVYLKMVDYLRLTQAKNTFNRLSAYHYLNIPVSNSTEPIRGIDYIHPVVTPGVDYATAVITKCLMPNGKVEFEFERFSEQDVLQSEQATAMVSYMINSKNDAYQVIRDWAQGALLNKNGIVMVSPIREGITQYKEVEGTKDQLRAFEIMAADKGLTAKRQNMRRIDVDMAGLAEEVAADQDPEEAIAANTVYRAKYKLTGYSTTVKIKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHEAKAQFPFIDLESFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWIRKDIDNDGEEEIIECCFSGSYVIYCKEVDFIPLANMCPKPIVGNFFGYSLAERLVPLQEYSTSIARAEMAFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFVLDRKFDPSKHIFEFQPMQGNLAYVQSAMQRFESDRMAMIGMTSPSDVLNPEVMQDGNSGYKLQLAMGPNQLIQDEMVKNCAIALRDVIYITWKTLIQYSDDYNIQQLAAVCGKGSPFMDAKSMENFEFIDRKMINIDLALGFLSDENRLTRQQLIGQAQAQFSQLMTQIPPMPEIFIKMRRPFEDTLRVLGVKDIDAYLPTLEEAAKIVAQKQQQSPDPDTLEKQSRTELNKAKVEQTKANAVFTMKKAEDIDVDNMFESIAAQRGQLKAVQVD* |
| Ga0104988_1038815 | F000857 | AGGA | MEDDLKINEDYYTKGNLEAGVEGVLRKNNKLYNEVKSGTWSQTFSTPNLDYKIGAKDGTRYVQYEQRNVEEVRQQCKNMREFYKEHGTDNPFFAGTFHAMNLPKCFAHEISSKWFNNRPWELIKRDKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPSIPTK* |
| Ga0104988_103888 | F001059 | GGAG | MAYDIEALKQDLPNAKDLAQFVYDRTGVSLDLIGKPKDEQYLVAKNILEGKKIPSEFITDENPYVDRKEIIPEDELKPPPERPKDLPPEENQIHFFGATNMPHPFDPQSDRKVQIGFRKYDNGMITFQILGPLEKVAEGTRVNKYGQTVPQKYTWIDPRTPETVMRRPDGTFTEKGRGLYMYCTGEKGAGIWPLIDRTMSSIAQKNIADPWA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |