Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10467 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10467 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15794
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (13.33%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

15794

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (13.33%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F003267	Metagenome / Metatranscriptome	496	N
F003459	Metagenome	485	N
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F011581	Metagenome / Metatranscriptome	289	N
F012656	Metagenome / Metatranscriptome	278	N
F035287	Metagenome / Metatranscriptome	172	N
F044982	Metagenome	153	N
F046337	Metagenome / Metatranscriptome	151	N
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_104671	F044982	GGA	MEFDVFVGGSGKKLTDLQKEALANFGVSLADGAIENKSYALVTKWLEGVVKLAKQNLANANAIASNALAQSITVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPLQEWIAFKGIPLEGRDKKAANRSFAINIARKISREGLRATKFMSNAVTEDMVAVLTENIAEVLGKSISVATVR*
Ga0104988_1046711	F004837	N/A	MTQAEYLLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALPYIYQEADQFAQANHHTVTHAINNPNP*
Ga0104988_1046716	F046337	N/A	MEEVFLALADGNYAVGWLTKGQITFTNIHGEAWWTHEVAAWMYPNPPKP*
Ga0104988_1046717	F005845	N/A	MKPTPTDFRRWQIHIRKECVSCSRPDRSETITPWRVNWTLLGRILQAKNA*
Ga0104988_1046723	F035287	N/A	MIRPAPPKKKKGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNDLQHLIPVKDPYL*
Ga0104988_1046724	F003459	N/A	MNHLVTIPKSDISKADIADIAANLIHRIEEGEVNPIAAHVRLKAVVKAVEQVLKATEQTVWDEAEKNGKTFSAFGADIQLKEGAITPDYSHDQQWSDLQASMKVREEQLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSISVTFKG*
Ga0104988_1046725	F098895	N/A	MTLLEKCNADVYKAILDIKQESPEIGEKLIFILQKHESPFDLTCSEMLWFSANLPYKIWNCKIHTFFLLFESQQTTEMR*
Ga0104988_1046729	F011581	AGG	MTYHSTRPAKALTNALERLMIAISAQELEENHVLLCEYRRACDLLGYDPLKAQWNNVEGVNASGLPNDEPHTVDYYPLLNPEE*
Ga0104988_104673	F000557	N/A	MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREASWFGWFHKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ*
Ga0104988_104676	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMNQHMMALCNYGLIERLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAWEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFIITF*
Ga0104988_104679	F012656	AGG	MDSLMMVITTLCDCIGAVEESNAPNAFAVKMKIVDKIDN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10467

Overview

Ecosystem & Geography

Associated Families

Sequences