Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10958 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10958 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	44917
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (77.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

44917

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (77.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F008072	Metagenome / Metatranscriptome	339	Y
F009735	Metagenome / Metatranscriptome	313	Y
F010601	Metagenome	301	Y
F016782	Metagenome / Metatranscriptome	244	Y
F017814	Metagenome / Metatranscriptome	238	Y
F020318	Metagenome / Metatranscriptome	224	Y
F086809	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1095811	F010601	AGGAG	VDAIEDKIKGKVPICIRKDYIMYLEFFREHLWFHININRWTAEIKRSCQRDFALVQNLIDKPIVALVREDDIKLIKFAQSNGWLEKCQIVLLDGSKAFIYASKA*
Ga0104988_1095833	F009735	GAG	MTMMTGIVEAISTKDVNTKFGSKPTYSLKVNGTWVKCGFKNPNAGAGDEVEFDGNTGTYGLETKAVNVLRKGAATPPPEATSNTAVAVPRTTGSGYAAKVFPIPPLHGDRAIVRQNALARATDIYIAARGGKPFELEGSNLDFVISLARKFEAYTAGDLDLAEAEAESAVE*
Ga0104988_1095839	F016782	N/A	VEKQVETTSSPLYAAATESLVSDASATSTFEKMIQVAYTHSTVDTFTKELKDTERLIKKDFEISSMPGPWRSAKSVIHTAMKLSISLVDDNGSYCGKTYLQNKIKEMKPDKEEITNQQYIDKVLKLLMDIPEHLDAKTIHMEVKKMIFS*
Ga0104988_1095842	F086809	AGGAG	MNLDTQLDLVDEMQWEDSGKVEMVSLEDAGLEEPALAEETHLHGHVFRNGIHSYLDWFYDGSIENDDY*
Ga0104988_1095847	F017814	GAGG	MKTPSLYQRNKGFKMSQSNFDFNAFSSLVEHKPAGLQIFLAQQLLSNALWSMTKYDNPRTEEVNNIFNEVKALRAKLKADALARA*
Ga0104988_1095850	F000649	AGGAGG	MSKSATHYLPDGKIYKGAMHKVGSTLMTGAKHTAQSKKLSHTPPKKPKK*
Ga0104988_1095853	F008072	N/A	MLGNMAETAVVTGIPLATLKIWKATDWFKEYCLQLQSEDVQQMDSNLKRVITKALKATEDRLDLGDAQFDQKTGEIIRIPVKAHVALKISTELMTKQQKLYENPIKEEVERTIDDRLLKLSEEFARFATMKKNTIDVETRVVTDRVIPDNVQT*
Ga0104988_1095856	F020318	AGGAG	MEIVSSDNFDEWKHHPVTKRLMKMLSNDRESMKEGLVNNAFDDEQEVKGRCRAIAIILNLEYEDLFETIQKKETNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10958

Overview

Ecosystem & Geography

Associated Families

Sequences