Scaffold Ga0105547_1027686

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105547_1027686

Scaffold Ga0105547_1027686

Overview

Basic Information
Taxon OID	3300007750 Open in IMG/M
Scaffold ID	Ga0105547_1027686 Open in IMG/M
Source Dataset Name	Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', st44is 200bp-25jan2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	1269
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Sponge (Stylissa Sp.) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Upa-Upasina (low pH), Papua New Guinea
Coordinates	Lat. (^o)	-9.8241	Long. (^o)	150.825833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041044	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105547_10276862	F041044	N/A	MPKRIEMALPVPTKSLLKMSPDAAMLFAPFGCTHPPPPVPRFLLMQNLSPKDIAGSDIMKLKVSWRIYPLKALKS*

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