NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105668_1023725

Scaffold Ga0105668_1023725


Overview

Basic Information
Taxon OID3300007758 Open in IMG/M
Scaffold IDGa0105668_1023725 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5319
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial Seamount, northeast Pacific Ocean
CoordinatesLat. (o)45.9372Long. (o)-130.082Alt. (m)Depth (m)1500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081441Metagenome / Metatranscriptome114N
F090505Metagenome / Metatranscriptome108N
F090506Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0105668_102372510F090506AGGAMSQINENIPRLTKAWKLLEEGNVILDPKNPLRALVRGTKDYAVNIAAQSCTCDDHKYKPELICKHIRAAQLARDIQIGAITLEVEN*
Ga0105668_10237253F081441AGGAMVLNSREKFIAFYSMFLTTHIGLGVNPAELDRDGMGHIFNAVLETVRKSVCPDVSEDEVKAIAEDFNIEMFKIRTVLDEALRSQKLGDRV*
Ga0105668_10237256F090505GAGGLNYEIWLSGNGGDISDSKLFSIFLEEWARPTKGQQLKIKGTLFEVDRTDPSDNPTGQMVKIFVSPYNPNKPFARSMRIGRRMRDSVRY*
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