Scaffold Ga0105015_1020711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105015_1020711

Scaffold Ga0105015_1020711

Overview

Basic Information
Taxon OID	3300007770 Open in IMG/M
Scaffold ID	Ga0105015_1020711 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3611
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.0	Long. (^o)	-64.66	Alt. (m)		Depth (m)	247
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049306	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105015_10207115	F049306	N/A	LFEEANLRCAVSDLIYLGAPKQKKYYFLTFQWSGNIDIDKPNPKTGEIEHDDYKWATIKEIKEIEDTNIPIYLLEKALEIQKEGEE*

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