NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105015_1031925

Scaffold Ga0105015_1031925


Overview

Basic Information
Taxon OID3300007770 Open in IMG/M
Scaffold IDGa0105015_1031925 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2600
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.0Long. (o)-64.66Alt. (m)Depth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005948Metagenome / Metatranscriptome385Y
F101840Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0105015_10319256F005948N/AMVELNHNVVSFNSDTLIKGNHGVLVAVFVTKKGSGSNKVEFRNGTTASATPIECTIFTAIEGNYQNIHRRFENGIFADCDCSAEVTVVFK*
Ga0105015_10319257F101840GAGMVTTYCTAGDVADFLRIPITATTTPNKAQVEKIINR

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