NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105700_1066110

Scaffold Ga0105700_1066110


Overview

Basic Information
Taxon OID3300007771 Open in IMG/M
Scaffold IDGa0105700_1066110 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA CLC_assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2836
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameMarker33 Vent, Axial Seamount, northeast Pacific Ocean
CoordinatesLat. (o)45.93316Long. (o)-129.9822Alt. (m)Depth (m)1518
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058538Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0105700_10661103F058538AGGAMYSQYKTAVMNRQRLHALLSWVNRKYYLEYEVVQENRDVFYVLFHDLNNKITTSIQRQVHGTTKPEH*
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