Scaffold Ga0105672_1062415

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105672_1062415

Scaffold Ga0105672_1062415

Overview

Basic Information
Taxon OID	3300007772 Open in IMG/M
Scaffold ID	Ga0105672_1062415 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	745
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Anemone Vent, Axial Seamount, northeast Pacific Ocean
Coordinates	Lat. (^o)	45.933177	Long. (^o)	-130.013868	Alt. (m)		Depth (m)	1541
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005684	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105672_10624152	F005684	AGCAGG	LLTVYDTEESPLSLMQVVRRKSEVREGRLCNRKLPRQAYYEPARGRFPDRGWNEHPHRSKSKQVCMASTGPG

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