Scaffold Ga0102954_1001011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102954_1001011

Scaffold Ga0102954_1001011

Overview

Basic Information
Taxon OID	3300007778 Open in IMG/M
Scaffold ID	Ga0102954_1001011 Open in IMG/M
Source Dataset Name	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8443
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.1329	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087221	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102954_10010112	F087221	AGG	MSSDIRGLVDRTFREYLDTPDKVNSYSYLTGGVAIDATTVAYDGDLLSVEEEDALDAGAIIEIGQEIMFSTALNTVSNEITVKRGQRGTTAAAHSAGDIIKIAPSYTRKAVYDAVTDQIENLYPTIYAVEEQTLTSATGYVALTGGDDNLIVAPLKAVSQFTTLASGNETSVQFRGVSVELIDVPTSVTASGKVVQFFGINTGINVHVTFKKKFGQVTDEDTTLASIGLESEYEPIIMAGVAAQLIAGKDISTMDASFITEQLQTASVPIGSSNSVRNSLLQYQQLLIQQARKDLRARYPEPVTINSVVYPSA*

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