Scaffold Ga0102954_1077585

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102954_1077585

Scaffold Ga0102954_1077585

Overview

Basic Information
Taxon OID	3300007778 Open in IMG/M
Scaffold ID	Ga0102954_1077585 Open in IMG/M
Source Dataset Name	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	925
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.1329	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002980	Metagenome / Metatranscriptome	516	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102954_10775851	F002980	N/A	NPAFAGLKESHQEVSYVEWLPNLTDDMGYQSILITSNMGWSSEIFYFNYGTQTQADQYGEVLGDFDSSSYRVSGGYGFEFKDWLVGARLNLYNHNIIDDYDVKMNFGFDLGAYKEFGNTSLGLVLKDVGGETEFLDQKLKLPMSVGIGVGHRFGDFTLSSDVKFFEDYNSIGLGGQYDLGIASLKLGYYTESEFEVDYLTFGGGINAGIVDISLAYYYNTDSFHNETLMISFGFDL*

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