Scaffold Ga0102954_1078981

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102954_1078981

Scaffold Ga0102954_1078981

Overview

Basic Information
Taxon OID	3300007778 Open in IMG/M
Scaffold ID	Ga0102954_1078981 Open in IMG/M
Source Dataset Name	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	917
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.1329	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006971	Metagenome / Metatranscriptome	361	Y
F039398	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102954_10789811	F006971	GGA	MIYQGIEYKKHQKVKFVIPTDLRIVDPQTKKILWRYGIIQFFAKNTKSAWILENGTKETVKISLFCVLP
Ga0102954_10789812	F039398	GAGG	MEYAADDINIGYMTCLMFINSEKTLVDKLNNITELQPIDHQGGVSFDLVLKSLPTYVEITMNHNGNFDIYTKTFKGETEFKDEVVETLINFLHIFYINMVDDENKLLMNAIDTTTYRKIAKRMHYREKFGNDLSGD*

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