Scaffold Ga0099795_10004303

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099795_10004303

Scaffold Ga0099795_10004303

Overview

Basic Information
Taxon OID	3300007788 Open in IMG/M
Scaffold ID	Ga0099795_10004303 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3657
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008679	Metagenome / Metatranscriptome	329	Y
F041462	Metagenome	160	Y
F069382	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099795_100043031	F041462	GGAGG	MTKEELIEAACEVIGGNVKDLSVDQVQKLMTITQHLTDLSLKEHRSFGNLCTIRATIDAAVTAGRTMDDLVTVCLTKEQCAFLLALLDEEIREHA*
Ga0099795_100043033	F008679	GGAGG	MNGLLIVFAAVFLLFLPLFDRVGAAGPYDGEWTGTATPTGARCKRAVVKFTVKGRDVSGEARFERDAPKINGTVVADGAVGATIGFQPLWGQFTGDEFEGTFTSFDCQWKAVLKRAK*
Ga0099795_100043035	F069382	AGGA	MKANLKVILSVIGVAALLASPAMAKQVRPAKLSVVPSDARASVAPYGLNEGGPYTPSVPTSRYDRNRDFQNGSRG*

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