Scaffold Ga0105679_10634011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105679_10634011

Scaffold Ga0105679_10634011

Overview

Basic Information
Taxon OID	3300007790 Open in IMG/M
Scaffold ID	Ga0105679_10634011 Open in IMG/M
Source Dataset Name	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwegian Sequencing Centre (NSC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1628
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Zebra Blood And Desert Soils. Microbial Community Dynamics Using Metagenomics And Cultivation

Source Dataset Sampling Location
Location Name	Etosha National Park, Namibia
Coordinates	Lat. (^o)	-19.03133	Long. (^o)	15.54865	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014066	Metagenome / Metatranscriptome	266	Y
F029653	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105679_106340112	F014066	GAGG	MPKELTPEMLDELRTEIKSYFEAYYSALRNEIAGHDALYDSIPRSFKGSREVVTNFCRDGVLIVHLPAQGGQDSYVFESVLDTRVEDAVAGNIPTLPSGKRATIIDYSPYEDFGAVSLTEPLRQEEEGRTYESEWTRMDIVSWNNLGMWRDKRQARGLARNDLRPYLEEI*
Ga0105679_106340113	F029653	GGCGG	MQIPDRTGVIAGYRVWRIIPGRWVAPSESLYAQSSHRSWSLAGPTVACCPPRVQVDPNKPPLLSGCESAPSFGCACGLYARYEPTREDHLLPYVAGSVLAWGRIVHHEERSFFRAQKAFPIAFVRPRGGGGMYTRAESEDKFFRVAELLGAEVLGGPEELREYTEEEASRW*

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